Description
A pyrimidine 2'-deoxyribonucleoside having 5-(4,5-dihydroxypentyl)uracil as the nucleobase.
Chemical properties
| Chemical formula | Net charge | Average mass |
|---|---|---|
| C14H22N2O7 | 0 | 330.334 |
uridine.svg)
Recommended notation
| Name | 2'-deoxy-5-(4,5-dihydroxypentyl)uridine |
|---|---|
| Abbreviation | dhpdU |
Nomenclature
| IUPAC | SMILES | InChI | InChIKey | Synonyms |
|---|---|---|---|---|
| 2'-deoxy-5-(4,5-dihydroxypentyl)uridine | C1=C(CCCC(CO)O)C(NC(N1[C@@H]2O[C@H](CO)[C@H](C2)O)=O)=O | InChI=1S/C14H22N2O7/c17-6-9(19)3-1-2-8-5-16(14(22)15-13(8)21)12-4-10(20)11(7-18)23-12/h5,9-12,17-20H,1-4,6-7H2,(H,15,21,22)/t9?,10-,11+,12+/m0/s1 | XMJPAHNUWXBESH-FGHRXAJISA-N |
|
Nature
| Origin | Function | Functional detail |
Organisms
|
References |
|---|---|---|---|---|
| natural | hypermodified nucleobase | bacteriophage SP-15 |
|
Citations
- Brandon, C, et al. 1972. Structure of a new pyrimidine from Bacillus subtilis phage SP-15 nucleic acid. Nature: New Biology. 239(90).
- Karr, JR, et al. 2012. A whole-cell computational model predicts phenotype from genotype. Cell. 150(2).
- Marmur, J, et al. 1972. Unique properties of nucleic acid from Bacillus subtilis phage SP-15. Nature: New Biology. 239(90).
- Walker, MS, et al. 1978. Biosynthesis of 5-(4'5'-dihydroxypentyl) uracil as a nucleoside triphosphate in bacteriophage SP15-infected Bacillus subtilis. Journal of Virology. 25(2).