Description

A pyrimidine 2'-deoxyribonucleoside 5'-diphosphate that is 2'-deoxycytidine 5'-diphosphate (CDP) substituted by a hydroxymethyl group at position 5.

Chemical properties

Chemical formula Net charge Average mass
C10H17N3O11P2 0 417.20312
2'-deoxy-5-hydroxymethyl-CDP

Nomenclature

IUPAC SMILES InChI InChIKey Synonyms
2'-deoxy-5-(hydroxymethyl)cytidine 5'-(trihydrogen diphosphate) Nc1nc(=O)n(cc1CO)[C@H]1C[C@H](O)[C@@H](COP(O)(=O)OP(O)(O)=O)O1 InChI=1S/C10H17N3O11P2/c11-9-5(3-14)2-13(10(16)12-9)8-1-6(15)7(23-8)4-22-26(20,21)24-25(17,18)19/h2,6-8,14-15H,1,3-4H2,(H,20,21)(H2,11,12,16)(H2,17,18,19)/t6-,7+,8+/m0/s1 RQKDPSTWKKMBPM-XLPZGREQSA-N
  • diphosphoric acid mono-(5-hydroxymethyl-2'-deoxy-cytidin-5'-yl ester)
  • 2'-deoxy-5-hydroxymethylcytidine 5'-diphosphate
  • 2'-deoxy-5-hydroxymethylcytidine-5'-diphosphate

Database references:

CHEBI:835